From the main menu, select Projects & Users => Create i2b2 User. Enter your desired parameters as shown in the following screenshot: To create an i2b2 project, go to Projects & Users and select Create i2b2 Project.
#Macfusion install software#
This is the "Host-Only-Adapter" if you are using VirtualBox.Īfter all software components have been installed, go to the Menu (Main Menu =>) System Setup => Hive Tasks and select Load I2B2PM and I2B2HIVE. Select the interface with the 192.168.56.***-IP by pressing the space bar.
#Macfusion install software license#
In this case, the Oracle software license is accepted automatically by i2b2 Wizard.Ī window may pop up and ask you which network interface is used to communicate with the i2b2 Workbenches:
#Macfusion install install#
Please note that if you have selected to use a Oracle database and i2b2 Wizard has not been reconfigured to connect to Oracle database outside "localhost", i2b2 Wizard will attempt to install Oracle XE. This will take a considerable amount of time depending on your internet connection speed. To download and to install the required server software, select System Setup => Install Required Packages. But for now, it is highly recommended to stick to the defaults.Īfter a disclaimer screen, you will be presented with the default parameters screen:Īgain, just hit ENTER - and welcome to the main menu! Or if you want to install a different database or i2b2 version, type in the corresponding values (note: it's case-sensitive). For the next questions, just hit RETURN as well. Setting the configuration (i2b2 Version, database type) If everything is OK, you will be greeted by i2b2 Wizard after a few seconds (it will probably install the required tool "dialog" first) and asked to select your configuration (see below). If something goes wrong, you can easily revert to a "clean" machine.
Now it is highly recommended to create a "snapshot" of your VirtualBox virtual machine before running the i2b2 Wizard.
Sudo -s apt-get -y install dos2unix chmod +x wizard.sh find. Execute the following commands inside the i2b2 Wizard directory: The first time you want to start the i2b2 Wizard, you might need to perform some preparations. Don't forget to copy the i2b2 source file to. Better connect remotely to the VM via SSH, e.g. # interfaces(5) file used by ifup(8) and ifdown(8) auto lo iface lo inet loopbackĪuto eth1 iface eth1 inet static address 192.168.56.101 netmask 255.255.255.0įrom now on, it is highly recommended to not continue working in the VirtualBox window (because it's slow). If the connection does not work, you may need to edit /etc/network/interfaces to look like: You can use the command ifconfig to find out the IP. The "Host-Only-Adapter" is the interface with the 192.168.56.XXX-IP. To connect to your virtual machine, use the "Host-Only-Adapter". On Windows, you can use WinSCP ( ), on a Mac the program Cyberduck ( ) or the excellent MacFusion ( ). Then copy the directory with SFTP to the Linux machine into the /root directory. Reboot Copying the i2b2 Wizard files to the VMįirst, rename the i2b2 Wizard directory so that it does not contain spaces, e.g. Then reboot the virtual machine by typing:
You may need to enable root ssh access as described here:
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